Index

A

add_ccans() (in module circe.ccan_module)

add_region_infos() (in module circe.utils) average_alpha() (in module circe.circe)

C

calc_penalty() (in module circe.circe) chr_batch_graphical_lasso() (in module circe.circe) circe.ccan_module module circe.circe module circe.downloads module

circe.draw module circe.metacells module circe.utils module compute_atac_network() (in module circe.circe) compute_metacells() (in module circe.metacells) cov_to_corr() (in module circe.utils)

D

download_genes() (in module circe.downloads)

E

extract_atac_links() (in module circe.utils)

F

find_ccan_cutoff() (in module circe.ccan_module)

find_ccans() (in module circe.ccan_module)

G

get_distances_regions() (in module circe.circe)

get_distances_regions_from_dataframe() (in module circe.circe)

L

local_alpha() (in module circe.circe)

lsi() (in module circe.metacells)

M

make_ccan_graph() (in module circe.ccan_module) module circe.ccan_module circe.circe circe.downloads circe.draw circe.metacells circe.utils

N

number_of_ccans() (in module circe.ccan_module)

P

plot_ccan() (in module circe.draw) plot_connections() (in module circe.draw)

plot_connections_genes() (in module circe.draw) plot_genes() (in module circe.draw)

Q

quiet_dask() (in module circe.circe)

R

reconcile() (in module circe.circe)

S

single_graphical_lasso() (in module circe.circe) sliding_graphical_lasso() (in module circe.circe)

sort_regions() (in module circe.utils) subset_region() (in module circe.utils)

T

tfidf() (in module circe.metacells)