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CIRCE 0.3.9 documentation
CIRCE 0.3.9 documentation

CIRCE explained

  • Installation
  • Overview and algorithm
  • 🔧 Extended Preprocessing Guidance for CIRCE
  • Understanding CIRCE Co-accessibility Scores

Examples

  • Minimal example
  • 1. Finding co-accessible modules (CCAN)
  • 2. Visualizing cis co-accessible regions
  • 3. Building CellOracle base-GRN with CIRCE

API Reference

  • CCAN modules detection
  • Download gene coordinates
  • Drawing Utilities
  • Infer network
  • Metacells
  • Utilities
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